appleContainer

Added in version 26.04

The appleContainer scope controls how Apple container is used by Nextflow.

appleContainer.enabled

Execute tasks with Apple container (default: false).

appleContainer.engineOptions

Specify additional options supported by the container CLI (i.e., container [OPTIONS] run).

appleContainer.envWhitelist

Comma separated list of environment variable names to be included in the container environment.

appleContainer.kill

Set the signal used to stop a running container (default: true, which sends SIGTERM via container stop). Set to a signal name (e.g. 'SIGKILL') to use container kill -s, or false to disable.

appleContainer.registry

The registry from where container images are pulled. It should NOT include the protocol prefix (i.e., http://).

appleContainer.remove

Clean up the container after the execution (default: true).

appleContainer.runOptions

Specify extra command line options supported by the container run command (e.g., --rosetta, --ssh).

appleContainer.temp

Mounts a path of your choice as the /tmp directory in the container.

appleContainer.tty

Allocate a pseudo-tty (default: false).

appleContainer.writableInputMounts

When false, mount input directories as read-only (default: true).