podman

The podman scope controls how Podman containers are executed by Nextflow.

podman.enabled

Execute tasks with Podman containers (default: false).

podman.engineOptions

Specify additional options supported by the Podman engine i.e. podman [OPTIONS].

podman.envWhitelist

Comma separated list of environment variable names to be included in the container environment.

podman.mountFlags

Add the specified flags to the volume mounts e.g. 'ro,Z'.

podman.registry

The registry from where container images are pulled. It should be only used to specify a private registry server. It should NOT include the protocol prefix i.e. http://.

podman.remove

Clean-up the container after the execution (default: true).

podman.runOptions

Specify extra command line options supported by the podman run command.

podman.temp

Mounts a path of your choice as the /tmp directory in the container. Use the special value 'auto' to create a temporary directory each time a container is created.