sarus

The sarus scope controls how Sarus containers are executed by Nextflow.

sarus.enabled

Execute tasks with Sarus containers (default: false).

sarus.envWhitelist

Comma-separated list of environment variable names to be included in the container environment.

sarus.runOptions

Specify extra command line options supported by the sarus run command. See the Sarus user guide for details.

sarus.tty

Allocates a pseudo-tty (default: false).